SPECIAL TRACK

 

Grids for Biomedicine and Bioinformatics


 

 

CALL FOR PAPERS

 

Biomedicine and Bioinformatics are quickly evolving into a research field that encompasses the use of all kinds of biomedical information, from genetic and proteomic data to image data associated with particular patients in clinical settings.
Biomedical Informatics comprises the fields of Bioinformatics (e.g., genomics and proteomics) and Medical Informatics (e.g., medical image analysis), and deals with issues related to the access to information technology in medicine, the analysis of genomics data, security, interoperability and integration of data-intensive biomedical applications.

Main issues in this field are:

  • Integration of multiple laboratories that collect large amounts of biomedical data (genomics, post-genomics, biomedical images and signals), so that researchers can:
    • continue to maintain their own biomedical and computing resources autonomously;
    • face effectively the growth of data they need to manage and process, exploiting recent methods such as data mining, taking into account that biomedical data are produced and stored continuously; and
    • integrate and share data and findings in a controlled manner.
  • Provision of large computing power such that researchers have access to
    • high performance distributed computational resouces for computationally demanding data analysis, e.g., medical image processing and simulation of medical treatment or surgery;
    • large storage capacity and distributed databases for the efficient retrieval, annotation and archiving of biomedical data.

What is missing today is:

  • the full integration of methods and technologies to enhance all phases of biomedical informatics and health care, including research, diagnosis, prognosis, etc.;
  • the dissemination of such methods in the clinical practice, whenever they are developed, deployed and maintained.
  • The grid paradigm offers CPU and data handling capabilities and allows users and laboratories to share their facilities (computing and data storage resources, instruments, knowledge, etc.) through high bandwidth networks between dynamically formed Virtual Organizations.
    Grid middleware currently offers basic services for Grid management, and application development and deployment. To face the complexity of novel, cooperative, distributed Health and Bioinformatics applications, new specialized Grid services have to be developed: in such a way Grids can be deployed to address the needs of the biomedical community.
    The goal of this Conference Track is to discuss well-known and emerging biomedical data-intensive systems in the context of Grids and to analyse technologies and methodologies useful to develop such systems in these environments. In particular, this track aims at offering a high level forum for exchanging information, ideas, techniques and software on how to progress in this rapidly evolving field, in order to support the advance in scientific research education as well as industrial applications.

    TOPICS OF INTEREST include, but are not limited to:

    •   Grid Infrastructures for Biomedical Data Analysis and Management
    •   Problem Solving Environments for Biomedical and Bioinformatics Applications
    •   GRID based application in life science
    •   Workflow application for complex analysis processes
    •   High Throughput for in-silico virtual screening
    •   Grid Computing Infrastructures, Middleware and Tools for Healthcare
    •   Grid Computing Biomedical Services
    •   Collaboration Technologies
    •   Databases and the Grid in the Biomedical Field
    •   Extracting Knowledge from Biomedical Data Grids
    •   Data Grids for Bioinformatics
    •   Grid Architectures for Interactive Biomedical Applications
    •   Grid Architectures and Solutions for Data-Intensive Biomedical Applications
    •   Grid-based Biomedical Informatics Interoperability
    •   Security in Biomedical Data Grids
    •   Semantic Grids for Multimedia Biomedical Data
    •   Ubiquitous Access to Grid-enabled Applications in Biomedicine
    •   High-performance Computing for Data-Centric Biomedical Applications
    •   Grid-based Visualization of Biomedical Data
    •   Integration of Grid-enabled Applications into Clinical Practice

    IMPORTANT DATES

     

    January 31, 2007 February 15, 2007 

    Submission of (6-page, maximum) paper - Extended deadline

    March 15, 2007

    Notification of acceptance

    April 15, 2007

    Final camera-ready paper due

    April 15, 2007

    Pre-registration deadline


    You must pre-register to have your paper published in the proceedings.
    If you only plan to attend and are not submitting a paper, pre-registration is still strongly encouraged. This conference is space-limited, and registration may not be available on-site.

     

    SUBMISSION PROCEDURES FOR PAPER

     

    No hardcopy submissions are being accepted. Electronic submissions of original technical research papers will only be accepted in PDF format. Submitted papers have to be original, containing new and original results. There are two possibilities for initially submitting a paper:

    •   A full paper (6 pages). It is strongly encouraged to submit a full paper, which enables reviewers to assess it more objectively and authors to substantially improve the paper based on the review feedback. In this way, the high quality of this conference series can be adequately maintained and/or improved.
    •   A summary (3 pages). CBMS 2007 serves also as a forum for exchanging interesting and novel results of a work in progress and in this manner provides participants with an opportunity to come up-to-date on important issues. In this way, the 3-pages summaries are also accepted in the case that a full paper can not be delivered until the deadline.
    Submit your manuscript no later than February 15, 2007. Authors will be notified of acceptance by March 15, 2007 after a review process by two independent experts. Each accepted paper to the Special Track on Grids for Biomedical Informatics will be published in the conference proceedings by IEEE CS Press, conditional upon the author's advance registration. Papers that were not accepted by the Program Committee of the track can be considered for publication as regular submissions by the General Program Committee of IEEE CBMS 2007.
    Please note that the format of IEEE CBMS 2007 proceedings will be the IEEE Computer Science Press 6''x 9'', One-Column format. Submission is encouraged in this format.
    For more details please see the website of IEEE CBMS 2007: (http://cbms2007.uni-mb.si/).

     

    TRACK CHAIRS

    Giovanni Aloisio University of Lecce, Italy
    Almerico Murli University of Naples, Italy
    Maria Mirto University of Lecce, Italy
    Alfredo Tirado-Ramos University of Amsterdam, The Netherlands

     

    TRACK PROGRAM COMMITTEE

    Dave S. Angulo

    DePaul University, USA
    dangulo@cti.depaul.edu

    Robert G. Belleman

    University of Amsterdam, The Netherlands
    robbel@science.uva.nl

    Christian Barillot

    Campus de Beaulieu, 35042 Rennes Cedex, France
    Christian.Barillot@irisa.fr

    Vincent Breton

    CNRS/IN2P3, LPC Clermont-Ferrand, France
    breton@clermont.in2p3.fr

    Marian Bubak

    Institute of Computer Science, Poland
    bubak@uci.agh.edu.pl

    Mario Cannataro

    University "Magna Gręcia" of Catanzaro, Italy
    cannataro@unicz.it

    Sandro Fiore

    University of Lecce, Italy
    sandro.fiore@unile.it

    Andreas R. Formiconi

    Dept. of Clinical Pathophysiology - University of Florence, Italy
    arf@unifi.it

    Carole Goble

    University of Manchester, UK
    carole@cs.man.ac.uk

    Concettina Guerra

    University of Padova, Italy
    Concettina.Guerra@dei.unipd.it

    Vicente Hernandez

    Universidad Politecnica de Valencia
    vhernand@dsic.upv.es

    Dieter Kranzlmueller

    Joh. Kepler University Linz, Austria
    dk@gup.jku.at

    Giuliano Laccetti

    University of Naples "Federico II", Italy
    giuliano.laccetti@dma.unina.it

    Yannick Legre

    CNRS/IN2P3 France
    legre@clermont.in2p3.fr

    Nick Mankovich

    Philips Medical Systems, USA
    nick.mankovich@philips.com

    Robert L. Martino

    National Institutes of Health, USA
    Robert.Martino@nih.gov

    Silvia D. Olabarriaga

    University of Amsterdam, The Netherlands
    silvia@science.uva.nl

    Cecilia Saccone

    ITB/CNR Institute of Biomedical Technologies of Bari, Italy
    cecilia.saccone@itb.cnr.it

    Fabrizio Silvestri

    Information Science and Technology Institute (ISTI), CNR Pisa, Italy
    f.silvestri@isti.cnr.it

    Peter M.A. Sloot

    University of Amsterdam, The Netherlands
    sloot@science.uva.nl

    Tony Solomonides

    University of West of England, UK
    Tony.Solomonides@uwe.ac.uk

     

    Call for Papers (2-page .pdf file) 

    For further questions, please contact maria.mirto@unile.it


    [Organization] [HPCC CACT/NNL]
    Last modified: February 12, 2007